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  • We have previously reported on

    2021-09-03

    We have previously reported on the effects of replacing the isoquinoline P2∗ moiety with a naphthalene ring and modifying the connectivity for this element to the P2 proline ring, as demonstrated by compounds – (). Therein, it was hypothesized that the reduced potency observed with – when compared to and was caused by a conformational bias between the naphthalene and proline rings which resulted in a suboptimal overlay of the P2∗ region with the NS3 protease. Macrocyclization is an established strategy to enhance biological activity by limiting conformational ensembles and thereby favoring active conformers., , This has been an effective strategy to gain inhibitory activity against NS3 protease., Against this backdrop, tethering of the P2∗ naphthalene ring in to P4 was proposed as a potential approach to constrain the aromatic moiety in an active conformation. Models of the binding mode of acyclic 680C91 , 6-carbon tether macrocyclic naphthalene , and superimposed with on the HCV NS3 protease provided support for these hypotheses (). Hence, the initial goal of this work was to synthesize P2-P4 macrocycles and determine if potency could be secured in this series. To this end, compound was prepared which served as a synthetic precursor to these macrocycles. Removal of the Boc group on P4 provided the connection point for various tethers that were then cyclized through a ring closing metathesis (RCM) to P2∗. Compound exhibited modest potency that was comparable to in the GT 1b replicon (). A 6-carbon tether appeared to provide a favorable fit for this macrocyclic series based on modeling; however, tethers of four to eight carbon atoms were examined (compounds –, ). P2-P4 macrocycles with tether lengths of five () and six ( and ) carbon atoms were significantly more active than analogues incorporating tethers of four, seven, or eight carbons (, , and ). Compound , with the 6-carbon tether, proved to be the most active of this series with sub-nM replicon activity against GT 1a and 1b, respectively. Notably and importantly, was over 100-fold more active than the comparable acyclic analogue . Similarly, compound demonstrated a 140-fold potency increase versus the GT 1a (H77) replicon and a 250-fold increase against the GT 1b (Con1) replicon potency when compared to the analogous acyclic compound . These results suggested that conformational pre-organization P2-P4 macrocyclization was an effective tool to drive potency in this series. Since the six-carbon tether in demonstrated optimal activity within the series, this motif served as the basis for further analogue design that was focused on improving ADME 680C91 properties. Metabolic stability data revealed a low to moderate half-life for in human liver microsomes (HLM), with oxidation along the macrocyclic tether considered as a potential site of metabolic modification. To address this issue, two approaches were taken. The first approach involved the introduction of polarity into the methylene tether and to this end, a series of analogues were prepared in which either an oxygen (, ) or nitrogen atom (–) was introduced (). As shown in , positioning an oxygen atom in the tether, as in , did not have a significant effect on microsomal stability but did result in an erosion of potency. Replacing the cyclopropyl vinyl group at P1 with a -cyclopropyl moiety had previously been reported as a structural modification in the tripeptide acylsulfonamide series that enhanced metabolic stability. In this P2-P4 macrocycle chemotype, this modification also led to enhanced metabolic stability, as exemplified by compound , accompanied by only a small reduction in potency. Compound , when compared to , also demonstrated a significant improvement in metabolic stability with incorporation of the P1 -cyclopropyl moeity. Based on these observations, evaluation of P2-P4 macrocycles containing nitrogen in the tether was conducted using the P1 -cyclopropyl moiety to afford –. Interestingly, potency tracked inversely with basicity. For example, the cyclopropylamine-based macrocycle was approximately 10-fold more potent than the corresponding isopropylamine homologue . Consistent with this observation, the carbamate analogue exhibited antiviral potency comparable to while also offering enhanced stability in the human liver microsomal assay.